PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04267.1.g00020.1.am.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 235aa    MW: 25988 Da    PI: 5.1156
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04267.1.g00020.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-1861114356
                                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     k++++++eq + Le  F+++r++ + ++ +LA++lgL+ +qV +WFqNrRa++k
  Zpz_sc04267.1.g00020.1.am.mkhc  61 KKRRLSDEQARFLEMRFREERKLETPRKVQLAAELGLDAKQVAIWFQNRRARHK 114
                                     56689***********************************************99 PP

2HD-ZIP_I/II109.91.8e-3561152293
                     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                     kkrrls+eq+++LE+ F+ee+kLe+ rKv+la eLgl+++qva+WFqnrRAR+k+k +E+++++L++a+da + +n++L
  Zpz_sc04267.1.g00020.1.am.mkhc  61 KKRRLSDEQARFLEMRFREERKLETPRKVQLAAELGLDAKQVAIWFQNRRARHKSKLMEEEFAKLRAAHDAAVLQNCHL 139
                                     9****************************************************************************** PP

                     HD-ZIP_I/II  81 ekeveeLreelke 93 
                                     e+e  +L+++l+e
  Zpz_sc04267.1.g00020.1.am.mkhc 140 ETELLKLKDRLAE 152
                                     ********99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.84456116IPR001356Homeobox domain
SMARTSM003892.1E-1559120IPR001356Homeobox domain
SuperFamilySSF466892.74E-1660122IPR009057Homeodomain-like
CDDcd000867.51E-1461116No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1661114IPR009057Homeodomain-like
PfamPF000468.1E-1661114IPR001356Homeobox domain
PRINTSPR000314.6E-68796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000314.6E-696112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGGEAEERLL FPSFAFVDPA ESFAEAVDTS GSGGEQKKAR QRRRQKSKPV ADGEPGDEQA  60
KKRRLSDEQA RFLEMRFREE RKLETPRKVQ LAAELGLDAK QVAIWFQNRR ARHKSKLMEE  120
EFAKLRAAHD AAVLQNCHLE TELLKLKDRL AEAEEEKDKL IAAAAAATTG GGAGSSSPSS  180
SSFSTVTCNP AALVGQFRVE DEAADFSYMG QYAYNEYMMD FAAGYFGGVA DDQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14163RRRQKSKPVADGEPGDEQAKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985327.11e-101PREDICTED: homeobox-leucine zipper protein HOX12-like
SwissprotQ10QF22e-83HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
SwissprotA2XDK52e-83HOX12_ORYSI; Homeobox-leucine zipper protein HOX12
TrEMBLK4AEE81e-101K4AEE8_SETIT; Uncharacterized protein
STRINGSi037255m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-34homeobox protein 40